FIFA says it fined the Polish association 30,000 Swiss francs ($32,760) for "incidents of crowd disturbance" at the Oct. 15 match.
Poland fans lit numerous flares inside the stadium, and one visiting fan ran on to the field during the match.
FIFA fined the English FA 10,000 Swiss francs ($10,920) for allowing the incidents.
FIFA rules hold host nations responsible for security inside their stadiums.
England won 2-0 to qualify for the World Cup as winners of Group H.